Asset class: abundant_sequences
Description: Abundant sequences in the FASTA format -- PhiX spike-in, Poly(A), Poly(C) and adapter sequences

Attributes

  • asset_path: abundant_sequences
  • seek_keys:
    • http | s3 abundant_sequences: .
    • http | s3 phix: dbbd52ed8a2b4d11843dc9476705e89232ee7eaf38e661f9_phix.fa
    • http | s3 polyA: dbbd52ed8a2b4d11843dc9476705e89232ee7eaf38e661f9_polyA.fa
    • http | s3 polyC: dbbd52ed8a2b4d11843dc9476705e89232ee7eaf38e661f9_polyC.fa
    • http | s3 adapter_contam: dbbd52ed8a2b4d11843dc9476705e89232ee7eaf38e661f9_adapter_contam.fa
    • http | s3 dir: .
  • archive_digest: a6d9ee9af8c2899186b409fbb85ad49d
  • archive_size: 2.3KB
  • asset_size: 17.1KB
  • asset_parents: None
  • asset_children: None
  • asset_digest: c46f2ac8fdaf2d3315700ee6e2a5a47d
  • legacy_archive_digest: 2bf82e8edf3d6234ff906c33668c2e7c

Refgenie CLI pull command

refgenie pull mycobacterium_tuberculosis_h37rv-ensembl-h37rveb1/abundant_sequences:default

API endpoints

Asset directory contents

  • http | s3: dbbd52ed8a2b4d11843dc9476705e89232ee7eaf38e661f9_adapter_contam.fa
  • http | s3: dbbd52ed8a2b4d11843dc9476705e89232ee7eaf38e661f9_phix.fa
  • http | s3: dbbd52ed8a2b4d11843dc9476705e89232ee7eaf38e661f9_polyA.fa
  • http | s3: dbbd52ed8a2b4d11843dc9476705e89232ee7eaf38e661f9_polyC.fa