Aliases: sus_scrofa-ucsc-susscr2
Digest: 059d8eb13b5a40a4cf4d9044cd0d08456c806ce07c69a3ba
Description: The Sus Scrofa (susScr2) reference sequence from UCSC
Assets
| download | asset name:tag | asset description | asset/archive size | archive digest |
|---|---|---|---|---|
| abundant_sequences:default | Abundant sequences in the FASTA format -- PhiX spike-in, Poly(A), Poly(C) and adapter sequences | 16.4KB / 2.3KB |
ce943d0eaddbc1ef009a6eb2283a9f02
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| bismark_bt2_index:0.22.1 | Genome index for Bisulfite-Seq applications, produced by bismark_genome_preparation using bowtie2 | 10.2GB / 5.8GB |
ca4b30077b56e101454c2fb32fd6e0f4
|
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| bowtie1_index:1.3.0 | Genome index for bowtie, produced with bowtie-build | 2.2GB / 2.1GB |
d91104ca71f87ff4488e10ab65cd1f1a
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| bowtie2_index:2.4.1 | Genome index for bowtie2, produced with bowtie2-build | 3.0GB / 2.7GB |
e00ca8d772845b53c55a31b72b78a98e
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| bwa_index:0.7.17 | Genome index for Burrows-Wheeler Alignment Tool, produced with bwa index | 3.7GB / 2.4GB |
121b37a7f3a87d13ba67f4e01fd0ef0b
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| fasta:samtools-1.10 | DNA sequences in the FASTA format, indexed FASTA (produced with samtools index), chromosome sizes file and FASTA dict (produced with samtools dict) | 2.1GB / 701.4MB |
b5c8a04150eef9f195cde58d613fa404
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| small_rna:default | Small RNA sequences in the FASTA format. A predicted hairpin portion of a miRNA transcript and information on the location and sequence of the mature miRNA sequence | 87.9KB / 21.0KB |
15c901c36d6c8de6328feae9f8964274
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| star_index:2.7.3a | Genome index for STAR RNA-seq aligner, produced with STAR --runMode genomeGenerate | 20.7GB / 18.7GB |
1dfdb88c1336605cd5b21bc3c9ac9a5f
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