Aliases: oryza_sativa_japonica-ensembl-irgsp-10
Digest: 071c521f8c54bc8c9da3c2108aee7b45897ae2aa8cbead23
Description: The Oryza Sativa Japonica (IRGSP-1.0) reference sequence from Ensembl
Assets
| download | asset name:tag | asset description | asset/archive size | archive digest |
|---|---|---|---|---|
| abundant_sequences:default | Abundant sequences in the FASTA format -- PhiX spike-in, Poly(A), Poly(C) and adapter sequences | 57.4KB / 2.3KB |
b07d5c31bf476d23e9e102fd81f3ee3b
|
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| bismark_bt2_index:0.22.1 | Genome index for Bisulfite-Seq applications, produced by bismark_genome_preparation using bowtie2 | 1.7GB / 973.2MB |
4aa60aca0a179c4897ee8745ec3bffbf
|
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| bowtie1_index:1.3.0 | Genome index for bowtie, produced with bowtie-build | 389.3MB / 353.8MB |
bc2fc84868f1e90f9be413de3e18bb54
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| bowtie2_index:2.4.1 | Genome index for bowtie2, produced with bowtie2-build | 512.2MB / 458.6MB |
e1e0b0eb5e889926a9336626f2f5cf59
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| bwa_index:0.7.17 | Genome index for Burrows-Wheeler Alignment Tool, produced with bwa index | 623.0MB / 398.9MB |
fdd027354d534494915f73847f219ff4
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| fasta:samtools-1.10 | DNA sequences in the FASTA format, indexed FASTA (produced with samtools index), chromosome sizes file and FASTA dict (produced with samtools dict) | 361.9MB / 109.0MB |
5ca9a60eedecacfcc4ff29c6d5d394a7
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| star_index:2.7.3a | Genome index for STAR RNA-seq aligner, produced with STAR --runMode genomeGenerate | 4.7GB / 3.8GB |
6f94653c3f7d271c486944a5ce7e93e3
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