Aliases: mus_musculus-ensembl-grcm38
Digest: 0d2e9865673f3eaf02789c5bc1a14a99f60b4ddd6b12b8ec
Description: The Mus Musculus (GRCm38) reference sequence from Ensembl
Assets
| download | asset name:tag | asset description | asset/archive size | archive digest |
|---|---|---|---|---|
| abundant_sequences:default | Abundant sequences in the FASTA format -- PhiX spike-in, Poly(A), Poly(C) and adapter sequences | 16.5KB / 2.3KB |
2852cbff6f873656a21b9fa49ad3a2e6
|
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| bismark_bt2_index:0.22.1 | Genome index for Bisulfite-Seq applications, produced by bismark_genome_preparation using bowtie2 | 12.2GB / 6.8GB |
2b02daa3abb189cf038fe9833c426add
|
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| bowtie1_index:1.3.0 | Genome index for bowtie, produced with bowtie-build | 2.7GB / 2.4GB |
73fe93ada5e6f00dcb92f5c656e6c3f5
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| bowtie2_index:2.4.1 | Genome index for bowtie2, produced with bowtie2-build | 3.5GB / 3.1GB |
b2c23089ee32bf6c0e545cbb5d9c797b
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| bwa_index:0.7.17 | Genome index for Burrows-Wheeler Alignment Tool, produced with bwa index | 4.4GB / 2.8GB |
eb1cb75648e27f4a4e044180de1b2675
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| fasta:samtools-1.10 | DNA sequences in the FASTA format, indexed FASTA (produced with samtools index), chromosome sizes file and FASTA dict (produced with samtools dict) | 2.6GB / 768.0MB |
9f6f07f9c602aa9134bd90fa480e7a74
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| small_rna:default | Small RNA sequences in the FASTA format. A predicted hairpin portion of a miRNA transcript and information on the location and sequence of the mature miRNA sequence | 315.1KB / 75.7KB |
e6da94b0677d8117157515ff0f15399c
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| star_index:2.7.3a | Genome index for STAR RNA-seq aligner, produced with STAR --runMode genomeGenerate | 24.3GB / 22.0GB |
40c923f5d00c0045dac1dae8f1aaec8d
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