Aliases: rattus_norvegicus-ucsc-rn4
Digest: 1a9355e9c988fa829f9d6fa71a2eb769e26f1255575ae770
Description: The Rattus Norvegicus (rn4) reference sequence from UCSC
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asset name:tag
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asset description
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asset/archive size
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archive digest
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| abundant_sequences:default | Abundant sequences in the FASTA format -- PhiX spike-in, Poly(A), Poly(C) and adapter sequences | 16.5KB / 2.3KB | a4389fce12066869a01517790f397196 | |
| bismark_bt2_index:0.22.1 | Genome index for Bisulfite-Seq applications, produced by bismark_genome_preparation using bowtie2 | 11.8GB / 6.4GB | b8c6cdc422aeb632041c38eaadb4c2d4 | |
| bowtie1_index:1.3.0 | Genome index for bowtie, produced with bowtie-build | 2.5GB / 2.3GB | bbb79a242bedf3bedb87fc24bc789b63 | |
| bowtie2_index:2.4.1 | Genome index for bowtie2, produced with bowtie2-build | 3.3GB / 3.0GB | a2c10e146178faa8085a7e35e6476b39 | |
| bwa_index:0.7.17 | Genome index for Burrows-Wheeler Alignment Tool, produced with bwa index | 4.4GB / 2.8GB | 452981974197225cf90687f47f1ec3af | |
| fasta:samtools-1.10 | DNA sequences in the FASTA format, indexed FASTA (produced with samtools index), chromosome sizes file and FASTA dict (produced with samtools dict) | 2.6GB / 778.9MB | ec7e4485460739e747fab8ca0ba6fe39 | |
| small_rna:default | Small RNA sequences in the FASTA format. A predicted hairpin portion of a miRNA transcript and information on the location and sequence of the mature miRNA sequence | 1.3MB / 33.0KB | c065168fc307b8dee589bd9cbea1dd2a | |
| star_index:2.7.3a | Genome index for STAR RNA-seq aligner, produced with STAR --runMode genomeGenerate | 23.0GB / 20.6GB | cedc6d799ab940049fb89854c7b3d138 | |