Aliases: rattus_norvegicus-ucsc-rn4
Digest: 1a9355e9c988fa829f9d6fa71a2eb769e26f1255575ae770
Description: The Rattus Norvegicus (rn4) reference sequence from UCSC
Assets
| download | asset name:tag | asset description | asset/archive size | archive digest |
|---|---|---|---|---|
| abundant_sequences:default | Abundant sequences in the FASTA format -- PhiX spike-in, Poly(A), Poly(C) and adapter sequences | 16.5KB / 2.3KB |
a4389fce12066869a01517790f397196
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| bismark_bt2_index:0.22.1 | Genome index for Bisulfite-Seq applications, produced by bismark_genome_preparation using bowtie2 | 11.8GB / 6.4GB |
b8c6cdc422aeb632041c38eaadb4c2d4
|
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| bowtie1_index:1.3.0 | Genome index for bowtie, produced with bowtie-build | 2.5GB / 2.3GB |
bbb79a242bedf3bedb87fc24bc789b63
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| bowtie2_index:2.4.1 | Genome index for bowtie2, produced with bowtie2-build | 3.3GB / 3.0GB |
a2c10e146178faa8085a7e35e6476b39
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| bwa_index:0.7.17 | Genome index for Burrows-Wheeler Alignment Tool, produced with bwa index | 4.4GB / 2.8GB |
452981974197225cf90687f47f1ec3af
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| fasta:samtools-1.10 | DNA sequences in the FASTA format, indexed FASTA (produced with samtools index), chromosome sizes file and FASTA dict (produced with samtools dict) | 2.6GB / 778.9MB |
ec7e4485460739e747fab8ca0ba6fe39
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| small_rna:default | Small RNA sequences in the FASTA format. A predicted hairpin portion of a miRNA transcript and information on the location and sequence of the mature miRNA sequence | 1.3MB / 33.0KB |
c065168fc307b8dee589bd9cbea1dd2a
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| star_index:2.7.3a | Genome index for STAR RNA-seq aligner, produced with STAR --runMode genomeGenerate | 23.0GB / 20.6GB |
cedc6d799ab940049fb89854c7b3d138
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