Aliases: gallus_gallus-ensembl-galgal4
Digest: 37cbc002d76f52a5a839435513a93759b6c03009319dee67
Description: The Gallus Gallus (Galgal4) reference sequence from Ensembl
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asset name:tag
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asset description
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asset/archive size
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archive digest
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| abundant_sequences:default | Abundant sequences in the FASTA format -- PhiX spike-in, Poly(A), Poly(C) and adapter sequences | 16.6KB / 2.3KB | 78c048ff9249e8700a8dfb1f6972d421 | |
| bismark_bt2_index:0.22.1 | Genome index for Bisulfite-Seq applications, produced by bismark_genome_preparation using bowtie2 | 4.5GB / 2.6GB | b8083e2ebdba7d96736d9fb36f5d51e4 | |
| bowtie1_index:1.3.0 | Genome index for bowtie, produced with bowtie-build | 1022.4MB / 973.2MB | ed6cb88f8c4e78a3e8dd561ffc11ea6a | |
| bowtie2_index:2.4.1 | Genome index for bowtie2, produced with bowtie2-build | 1.3GB / 1.2GB | 0a25d2ffa17ec70345c2dd094db82b93 | |
| bwa_index:0.7.17 | Genome index for Burrows-Wheeler Alignment Tool, produced with bwa index | 1.6GB / 1.1GB | 509ac153ca8f0b6e78f871c82dcb17e7 | |
| fasta:samtools-1.10 | DNA sequences in the FASTA format, indexed FASTA (produced with samtools index), chromosome sizes file and FASTA dict (produced with samtools dict) | 972.5MB / 291.5MB | 2691d0647ba4f74bffdadd57c21c5b1a | |
| small_rna:default | Small RNA sequences in the FASTA format. A predicted hairpin portion of a miRNA transcript and information on the location and sequence of the mature miRNA sequence | 191.2KB / 46.3KB | 4e022f7f33119d103a23b34ecc4261d5 | |
| star_index:2.7.3a | Genome index for STAR RNA-seq aligner, produced with STAR --runMode genomeGenerate | 10.0GB / 8.8GB | 3281fb6b1148e40bf0b3632fbbb24fd0 | |