Aliases: canis_familiaris-ucsc-canfam3
Digest: 3d42ad3323e23b478afede1f18ed387953a9790a15228328
Description: The Canis Familiaris (canFam3) reference sequence from UCSC
Assets
| download | asset name:tag | asset description | asset/archive size | archive digest |
|---|---|---|---|---|
| abundant_sequences:default | Abundant sequences in the FASTA format -- PhiX spike-in, Poly(A), Poly(C) and adapter sequences | 1.1MB / 2.3KB |
b978d977bf898830a7707f1691fa240c
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| bismark_bt2_index:0.22.1 | Genome index for Bisulfite-Seq applications, produced by bismark_genome_preparation using bowtie2 | 10.6GB / 6.1GB |
5f96e271dce193fd6c23da4ce56d36a7
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| bowtie1_index:1.3.0 | Genome index for bowtie, produced with bowtie-build | 2.3GB / 2.2GB |
ffa74e3ab737f874746f2bd2f96336b1
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| bowtie2_index:2.4.1 | Genome index for bowtie2, produced with bowtie2-build | 3.1GB / 2.8GB |
0d118de40d3e870f974022408b5686cd
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| bwa_index:0.7.17 | Genome index for Burrows-Wheeler Alignment Tool, produced with bwa index | 3.8GB / 2.5GB |
358a1c28adf6acd467f21acf7a7cdd96
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| fasta:samtools-1.10 | DNA sequences in the FASTA format, indexed FASTA (produced with samtools index), chromosome sizes file and FASTA dict (produced with samtools dict) | 2.2GB / 728.3MB |
29e855e177fa280edf0562a530ca7909
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| small_rna:default | Small RNA sequences in the FASTA format. A predicted hairpin portion of a miRNA transcript and information on the location and sequence of the mature miRNA sequence | 1.2MB / 27.7KB |
7e44eb0dc9f26301f5a1b6aeb8f36925
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| star_index:2.7.3a | Genome index for STAR RNA-seq aligner, produced with STAR --runMode genomeGenerate | 21.4GB / 19.4GB |
e62b7f71c6ec09f9c1f9c9a148e97b8c
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