Aliases: mus_musculus-ucsc-mm10
Digest: 443c763a34b124ad963f91014b62d7dea19ebd27df0d1278
Description: The Mus Musculus (mm10) reference sequence from UCSC
Assets
| download | asset name:tag | asset description | asset/archive size | archive digest |
|---|---|---|---|---|
| abundant_sequences:default | Abundant sequences in the FASTA format -- PhiX spike-in, Poly(A), Poly(C) and adapter sequences | 589.6KB / 2.3KB |
2e4ef27c5284f4edbe35bb170d07721f
|
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| bismark_bt2_index:0.22.1 | Genome index for Bisulfite-Seq applications, produced by bismark_genome_preparation using bowtie2 | 12.2GB / 6.8GB |
394061df332e4c0f4cdacc87260f6aaa
|
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| bowtie1_index:1.3.0 | Genome index for bowtie, produced with bowtie-build | 2.6GB / 2.4GB |
eff92912730da2f9f8145f4c5470bc5d
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| bowtie2_index:2.4.1 | Genome index for bowtie2, produced with bowtie2-build | 3.5GB / 3.1GB |
f59af7771e2f2692e5a2500dce03777a
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| bwa_index:0.7.17 | Genome index for Burrows-Wheeler Alignment Tool, produced with bwa index | 4.4GB / 2.8GB |
e65c48f542a4504ed2085a52b5eeefab
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| fasta:samtools-1.10 | DNA sequences in the FASTA format, indexed FASTA (produced with samtools index), chromosome sizes file and FASTA dict (produced with samtools dict) | 2.6GB / 828.2MB |
0fb5f030e3f64b47bf183c4386ae7e33
|
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| small_rna:default | Small RNA sequences in the FASTA format. A predicted hairpin portion of a miRNA transcript and information on the location and sequence of the mature miRNA sequence | 315.0KB / 75.6KB |
803d8ed91b030e64c18990a17afbec9c
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| star_index:2.7.3a | Genome index for STAR RNA-seq aligner, produced with STAR --runMode genomeGenerate | 24.3GB / 22.0GB |
cf094e33b53e93391bba3a4aec705841
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