Aliases: sus_scrofa-ensembl-sscrofa9
Digest: 4d985797b976e420c2896d7d1c7e36f0086942c32cc0ea17
Description: The Sus Scrofa (Sscrofa9) reference sequence from Ensembl
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asset name:tag
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asset description
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asset/archive size
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archive digest
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| abundant_sequences:default | Abundant sequences in the FASTA format -- PhiX spike-in, Poly(A), Poly(C) and adapter sequences | 16.5KB / 2.3KB | 29564c6fbfa098c8fe6f3ddc5db087e8 | |
| bismark_bt2_index:0.22.1 | Genome index for Bisulfite-Seq applications, produced by bismark_genome_preparation using bowtie2 | 10.2GB / 5.8GB | fb1cc2ccfd5475b13391702b55eb2797 | |
| bowtie1_index:1.3.0 | Genome index for bowtie, produced with bowtie-build | 2.2GB / 2.1GB | 612e937c898fda1aa75a4c72b213d360 | |
| bowtie2_index:2.4.1 | Genome index for bowtie2, produced with bowtie2-build | 3.0GB / 2.7GB | e3d3a7e04550aa209fc501540d4ed0f2 | |
| bwa_index:0.7.17 | Genome index for Burrows-Wheeler Alignment Tool, produced with bwa index | 3.7GB / 2.4GB | 240d03e20a9b49dd70fcf485b29e9dbe | |
| fasta:samtools-1.10 | DNA sequences in the FASTA format, indexed FASTA (produced with samtools index), chromosome sizes file and FASTA dict (produced with samtools dict) | 2.1GB / 651.5MB | 305d1cc3b923cfe6b0cb1515b9babc63 | |
| small_rna:default | Small RNA sequences in the FASTA format. A predicted hairpin portion of a miRNA transcript and information on the location and sequence of the mature miRNA sequence | 88.0KB / 21.1KB | 1d178f1b7e9f181ec322e9af81488cd3 | |
| star_index:2.7.3a | Genome index for STAR RNA-seq aligner, produced with STAR --runMode genomeGenerate | 20.7GB / 18.7GB | f1fd65d14d4740a2c8ba781946b28288 | |