Aliases: sus_scrofa-ensembl-sscrofa102
Digest: 4dffabfea72b853ee1b1b1b488589acf447b48df309803de
Description: The Sus Scrofa (Sscrofa10.2) reference sequence from Ensembl
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asset name:tag
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asset description
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asset/archive size
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archive digest
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| abundant_sequences:default | Abundant sequences in the FASTA format -- PhiX spike-in, Poly(A), Poly(C) and adapter sequences | 16.5KB / 2.3KB | 717dd17bcc6f56c9755a4eb308488191 | |
| bismark_bt2_index:0.22.1 | Genome index for Bisulfite-Seq applications, produced by bismark_genome_preparation using bowtie2 | 11.1GB / 6.0GB | 5f194a997ced102470444fd3c16ba3f4 | |
| bowtie1_index:1.3.0 | Genome index for bowtie, produced with bowtie-build | 2.3GB / 2.1GB | 1e927a31079b527b7bc0b06b1ba483e8 | |
| bowtie2_index:2.4.1 | Genome index for bowtie2, produced with bowtie2-build | 3.1GB / 2.8GB | 6b17201c7f9173b5fffbc328b0b9ac9b | |
| bwa_index:0.7.17 | Genome index for Burrows-Wheeler Alignment Tool, produced with bwa index | 4.2GB / 2.7GB | 25b1058306ad2b93cb4e6f1d1dfe3423 | |
| fasta:samtools-1.10 | DNA sequences in the FASTA format, indexed FASTA (produced with samtools index), chromosome sizes file and FASTA dict (produced with samtools dict) | 2.5GB / 680.8MB | e872f38d19871341848922213e1d7db0 | |
| star_index:2.7.3a | Genome index for STAR RNA-seq aligner, produced with STAR --runMode genomeGenerate | 21.7GB / 19.4GB | 22ff3cc2b085b358cea2bde4c588daa0 | |