Aliases: gallus_gallus-ucsc-galgal4
Digest: 67dd296805602e61419a90c7cdf00d8a2ae4001eb31edb35
Description: The Gallus Gallus (galGal4) reference sequence from UCSC
Assets
| download | asset name:tag | asset description | asset/archive size | archive digest |
|---|---|---|---|---|
| abundant_sequences:default | Abundant sequences in the FASTA format -- PhiX spike-in, Poly(A), Poly(C) and adapter sequences | 16.5KB / 2.3KB |
85c06deb70543c446eb0e2fd1d06fadd
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| bismark_bt2_index:0.22.1 | Genome index for Bisulfite-Seq applications, produced by bismark_genome_preparation using bowtie2 | 4.5GB / 2.6GB |
af492430b20a614610eda9ab0f7bb133
|
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| bowtie1_index:1.3.0 | Genome index for bowtie, produced with bowtie-build | 1022.4MB / 973.2MB |
9f4ce1bbcdfbabac1e983dd8eec0defd
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| bowtie2_index:2.4.1 | Genome index for bowtie2, produced with bowtie2-build | 1.3GB / 1.2GB |
2d7428a834be984adac2af4723d13540
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| bwa_index:0.7.17 | Genome index for Burrows-Wheeler Alignment Tool, produced with bwa index | 1.6GB / 1.1GB |
b63cc294673b6417b29084968eb0ca88
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| fasta:samtools-1.10 | DNA sequences in the FASTA format, indexed FASTA (produced with samtools index), chromosome sizes file and FASTA dict (produced with samtools dict) | 975.7MB / 317.2MB |
e5c8d6ce18fa207fdae743a692e82f56
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| small_rna:default | Small RNA sequences in the FASTA format. A predicted hairpin portion of a miRNA transcript and information on the location and sequence of the mature miRNA sequence | 763.7KB / 46.1KB |
4e29578a6479084f5a4895243a95851c
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| star_index:2.7.3a | Genome index for STAR RNA-seq aligner, produced with STAR --runMode genomeGenerate | 10.0GB / 8.8GB |
282503145c06d3ec62e36073bf898279
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