Aliases: oryza_sativa_japonica-ensembl-msu6
Digest: 7289dc4a73bf8223f437aba8a9aff6d97371ea26d7d6ce68
Description: The Oryza Sativa Japonica (MSU6) reference sequence from Ensembl
Assets
| download | asset name:tag | asset description | asset/archive size | archive digest |
|---|---|---|---|---|
| abundant_sequences:default | Abundant sequences in the FASTA format -- PhiX spike-in, Poly(A), Poly(C) and adapter sequences | 16.7KB / 2.3KB |
868fd803db08b7990b4d11c3054daaea
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| bismark_bt2_index:0.22.1 | Genome index for Bisulfite-Seq applications, produced by bismark_genome_preparation using bowtie2 | 1.7GB / 974.1MB |
07c85d361350338b533b4bd44096b6bb
|
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| bowtie1_index:1.3.0 | Genome index for bowtie, produced with bowtie-build | 389.5MB / 354.1MB |
47820e9e150d9802df8960fcd1a518e5
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| bowtie2_index:2.4.1 | Genome index for bowtie2, produced with bowtie2-build | 512.4MB / 459.0MB |
7fc98b2f84970539a75db716fb12ab35
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| bwa_index:0.7.17 | Genome index for Burrows-Wheeler Alignment Tool, produced with bwa index | 623.3MB / 399.2MB |
f3be92a6557361caff81fa2ac211354d
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| fasta:samtools-1.10 | DNA sequences in the FASTA format, indexed FASTA (produced with samtools index), chromosome sizes file and FASTA dict (produced with samtools dict) | 362.1MB / 109.1MB |
9e39627f65501dd4bc776031b47c755c
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| small_rna:default | Small RNA sequences in the FASTA format. A predicted hairpin portion of a miRNA transcript and information on the location and sequence of the mature miRNA sequence | 179.1KB / 44.9KB |
1c6f6a6950b9b05bc6070cc53d0fee12
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| star_index:2.7.3a | Genome index for STAR RNA-seq aligner, produced with STAR --runMode genomeGenerate | 4.7GB / 3.8GB |
2e508f61d8d9e8195c5c61bce1b2a03a
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