Aliases: sus_scrofa-ncbi-sscrofa10
Digest: 8b7b25fb39e466da501046c2479acdce954ccceb1e3408c5
Description: The Sus Scrofa (Sscrofa10) reference sequence from NCBI
Assets
| download | asset name:tag | asset description | asset/archive size | archive digest |
|---|---|---|---|---|
| abundant_sequences:default | Abundant sequences in the FASTA format -- PhiX spike-in, Poly(A), Poly(C) and adapter sequences | 61.7KB / 2.3KB |
9a234576ff83c2b0438d7da198971003
|
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| bismark_bt2_index:0.22.1 | Genome index for Bisulfite-Seq applications, produced by bismark_genome_preparation using bowtie2 | 11.0GB / 6.0GB |
870bd113ff50c755061e525121c5608f
|
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| bowtie1_index:1.3.0 | Genome index for bowtie, produced with bowtie-build | 2.3GB / 2.2GB |
fbadff2245a1b61fc428dfe83662dd5c
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| bowtie2_index:2.4.1 | Genome index for bowtie2, produced with bowtie2-build | 3.1GB / 2.8GB |
9782e3b63555f93d80102b938f5bcbed
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| bwa_index:0.7.17 | Genome index for Burrows-Wheeler Alignment Tool, produced with bwa index | 4.1GB / 2.6GB |
d4aa4ea7344d260c402aed125a5e309b
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| fasta:samtools-1.10 | DNA sequences in the FASTA format, indexed FASTA (produced with samtools index), chromosome sizes file and FASTA dict (produced with samtools dict) | 2.4GB / 677.8MB |
f362bceb960bad8631e68fa15fa89f68
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| small_rna:default | Small RNA sequences in the FASTA format. A predicted hairpin portion of a miRNA transcript and information on the location and sequence of the mature miRNA sequence | 661.1KB / 21.0KB |
f786e57a3d98235464ca2ce559a1e110
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| star_index:2.7.3a | Genome index for STAR RNA-seq aligner, produced with STAR --runMode genomeGenerate | 21.8GB / 19.5GB |
d10cd64b8e8323f3547bb0c74cf43492
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