Aliases: danio_rerio-ucsc-danrer7
Digest: 8d7249dda14dc887ce085d5eae5dc7bc445ac889b46f8560
Description: The Danio Rerio (danRer7) reference sequence from UCSC
Assets
| download | asset name:tag | asset description | asset/archive size | archive digest |
|---|---|---|---|---|
| abundant_sequences:default | Abundant sequences in the FASTA format -- PhiX spike-in, Poly(A), Poly(C) and adapter sequences | 16.5KB / 2.3KB |
17aba68533792c68ae77efa4a0f446ef
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| bismark_bt2_index:0.22.1 | Genome index for Bisulfite-Seq applications, produced by bismark_genome_preparation using bowtie2 | 6.2GB / 3.4GB |
a8596bd4c4b2c0c410e94914d94c3b26
|
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| bowtie1_index:1.3.0 | Genome index for bowtie, produced with bowtie-build | 1.4GB / 1.2GB |
e42d506b07616115a29aab92fb7826a2
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| bowtie2_index:2.4.1 | Genome index for bowtie2, produced with bowtie2-build | 1.8GB / 1.6GB |
465156d1db90ebb855595c5af42e1ea8
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| bwa_index:0.7.17 | Genome index for Burrows-Wheeler Alignment Tool, produced with bwa index | 2.2GB / 1.4GB |
92776c4a04048e2ad281101401ddf426
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| fasta:samtools-1.10 | DNA sequences in the FASTA format, indexed FASTA (produced with samtools index), chromosome sizes file and FASTA dict (produced with samtools dict) | 1.3GB / 419.0MB |
3599de2bb637def6fb6fe423855958ef
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| small_rna:default | Small RNA sequences in the FASTA format. A predicted hairpin portion of a miRNA transcript and information on the location and sequence of the mature miRNA sequence | 1.2MB / 18.3KB |
488da42d4c03c3d211fd8de1083e0920
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| star_index:2.7.3a | Genome index for STAR RNA-seq aligner, produced with STAR --runMode genomeGenerate | 13.1GB / 11.7GB |
2168a032ea10ff3720076072124f488b
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