Aliases: danio_rerio-ensembl-grcz10
Digest: 9400237ab90ddf710bde180f857292824114ced872efa1b8
Description: The Danio Rerio (GRCz10) reference sequence from Ensembl
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asset name:tag
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asset description
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asset/archive size
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archive digest
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| abundant_sequences:default | Abundant sequences in the FASTA format -- PhiX spike-in, Poly(A), Poly(C) and adapter sequences | 1.1MB / 2.3KB | 3f74d4a1397a59ab94e404b4acfea0e6 | |
| bismark_bt2_index:0.22.1 | Genome index for Bisulfite-Seq applications, produced by bismark_genome_preparation using bowtie2 | 6.1GB / 3.4GB | 347f659ecb169a1d15479aa91cf3516c | |
| bowtie1_index:1.3.0 | Genome index for bowtie, produced with bowtie-build | 1.3GB / 1.2GB | 8684df9a6021a0b65b17cc7e0225b9e6 | |
| bowtie2_index:2.4.1 | Genome index for bowtie2, produced with bowtie2-build | 1.8GB / 1.6GB | 490092f0d229bbdf3605166c1bdb7126 | |
| bwa_index:0.7.17 | Genome index for Burrows-Wheeler Alignment Tool, produced with bwa index | 2.2GB / 1.4GB | 626d1d1d1e7a9c1b71d5e1fc2dddf9c9 | |
| fasta:samtools-1.10 | DNA sequences in the FASTA format, indexed FASTA (produced with samtools index), chromosome sizes file and FASTA dict (produced with samtools dict) | 1.3GB / 383.2MB | caa8cff789255d9b856f9dc90168ee6f | |
| small_rna:default | Small RNA sequences in the FASTA format. A predicted hairpin portion of a miRNA transcript and information on the location and sequence of the mature miRNA sequence | 83.9KB / 18.3KB | 78f4bb951aaf60a9653c827692338c8b | |
| star_index:2.7.3a | Genome index for STAR RNA-seq aligner, produced with STAR --runMode genomeGenerate | 13.0GB / 11.5GB | 2295fdad480b19f60a13bcdd19008e53 | |