Aliases: pan_troglodytes-ucsc-pantro2
Digest: 98ed63fa7a0acc1fbcfddc6ee12aebc56ca8f5d51e0627b0
Description: The Pan Troglodytes (panTro2) reference sequence from UCSC
Assets
| download | asset name:tag | asset description | asset/archive size | archive digest |
|---|---|---|---|---|
| abundant_sequences:default | Abundant sequences in the FASTA format -- PhiX spike-in, Poly(A), Poly(C) and adapter sequences | 16.6KB / 2.3KB |
5150e334315ba9aac2caa6416cb01f10
|
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| bismark_bt2_index:0.22.1 | Genome index for Bisulfite-Seq applications, produced by bismark_genome_preparation using bowtie2 | 13.3GB / 7.1GB |
39d4d05879380573dfc74c8d135a568e
|
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| bowtie1_index:1.3.0 | Genome index for bowtie, produced with bowtie-build | 2.8GB / 2.5GB |
baa19fcfe5d8c519a5adea09d4642f5e
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| bowtie2_index:2.4.1 | Genome index for bowtie2, produced with bowtie2-build | 3.6GB / 3.3GB |
66662c57f411a7f7bb561f1fe330d6a5
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| bwa_index:0.7.17 | Genome index for Burrows-Wheeler Alignment Tool, produced with bwa index | 5.2GB / 3.2GB |
649314d105ca470a57410b2fcf3e422c
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| fasta:samtools-1.10 | DNA sequences in the FASTA format, indexed FASTA (produced with samtools index), chromosome sizes file and FASTA dict (produced with samtools dict) | 3.0GB / 861.2MB |
53ce9025955dee1f653cea0183b62fa0
|
|
| small_rna:default | Small RNA sequences in the FASTA format. A predicted hairpin portion of a miRNA transcript and information on the location and sequence of the mature miRNA sequence | 146.3KB / 35.2KB |
69d05f50ea56631523b5b53c06491339
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| star_index:2.7.3a | Genome index for STAR RNA-seq aligner, produced with STAR --runMode genomeGenerate | 25.6GB / 22.8GB |
06c5efbfc735688d01ec77bf249ea411
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