Aliases: mus_musculus-ucsc-mm9
Digest: 9dd3aec7f1271f9a9810bb2db8fd38d1225203b7498a30bc
Description: The Mus Musculus (mm9) reference sequence from UCSC
Assets
| download | asset name:tag | asset description | asset/archive size | archive digest |
|---|---|---|---|---|
| abundant_sequences:default | Abundant sequences in the FASTA format -- PhiX spike-in, Poly(A), Poly(C) and adapter sequences | 79.8KB / 2.3KB |
1dadbdc9b68dc9a48e3d807f7d21b7c1
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| bismark_bt2_index:0.22.1 | Genome index for Bisulfite-Seq applications, produced by bismark_genome_preparation using bowtie2 | 11.8GB / 6.6GB |
0b953666aa8ba3d102e91163e64099a0
|
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| bowtie1_index:1.3.0 | Genome index for bowtie, produced with bowtie-build | 2.6GB / 2.3GB |
d88849b201416079c937ebf902e8e280
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| bowtie2_index:2.4.1 | Genome index for bowtie2, produced with bowtie2-build | 3.4GB / 3.1GB |
a5948b64ec6ffca5040f37a719e19b00
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| bwa_index:0.7.17 | Genome index for Burrows-Wheeler Alignment Tool, produced with bwa index | 4.3GB / 2.8GB |
93513897d2e6675ebdd17cd0c0e1c9de
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| fasta:samtools-1.10 | DNA sequences in the FASTA format, indexed FASTA (produced with samtools index), chromosome sizes file and FASTA dict (produced with samtools dict) | 2.5GB / 800.5MB |
303359652a7cc961fb003d13244bc666
|
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| small_rna:default | Small RNA sequences in the FASTA format. A predicted hairpin portion of a miRNA transcript and information on the location and sequence of the mature miRNA sequence | 315.0KB / 75.7KB |
ce8a40f02314164f46224d3607f016ea
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| star_index:2.7.3a | Genome index for STAR RNA-seq aligner, produced with STAR --runMode genomeGenerate | 23.6GB / 21.3GB |
aa8e314e7864f47e39372e6db69f68ea
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