Aliases: sus_scrofa-ucsc-susscr3
Digest: a3183174863fa017824f12de47903725421b933f7ae8dd68
Description: The Sus Scrofa (susScr3) reference sequence from UCSC
Assets
| download | asset name:tag | asset description | asset/archive size | archive digest |
|---|---|---|---|---|
| abundant_sequences:default | Abundant sequences in the FASTA format -- PhiX spike-in, Poly(A), Poly(C) and adapter sequences | 16.4KB / 2.3KB |
7184eb7e58124d6c0f61f284d56b638d
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| bismark_bt2_index:0.22.1 | Genome index for Bisulfite-Seq applications, produced by bismark_genome_preparation using bowtie2 | 11.1GB / 6.0GB |
2c116b990ccfe88da93c82d93d06e1c3
|
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| bowtie1_index:1.3.0 | Genome index for bowtie, produced with bowtie-build | 2.3GB / 2.1GB |
63f6e3a20caedf9bcd6621f5e899031f
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| bowtie2_index:2.4.1 | Genome index for bowtie2, produced with bowtie2-build | 3.1GB / 2.8GB |
da206982cbe4749853edad3a84d174c6
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| bwa_index:0.7.17 | Genome index for Burrows-Wheeler Alignment Tool, produced with bwa index | 4.2GB / 2.7GB |
83c24892c41df9b7e4cb0a7d69644383
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| fasta:samtools-1.10 | DNA sequences in the FASTA format, indexed FASTA (produced with samtools index), chromosome sizes file and FASTA dict (produced with samtools dict) | 2.5GB / 734.4MB |
6e1acf6270fa5afbe76e7783e599effd
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| small_rna:default | Small RNA sequences in the FASTA format. A predicted hairpin portion of a miRNA transcript and information on the location and sequence of the mature miRNA sequence | 87.9KB / 21.0KB |
2871894d16c8d89c802548ad95c733f4
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| star_index:2.7.3a | Genome index for STAR RNA-seq aligner, produced with STAR --runMode genomeGenerate | 21.7GB / 19.4GB |
5b46b1137209a2d11b5db5936a16a2b5
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