Aliases: rattus_norvegicus-ucsc-rn5
Digest: a6636fc43b527471e52c99e704eb3532c0ad46c024e42a78
Description: The Rattus Norvegicus (rn5) reference sequence from UCSC
Assets
| download | asset name:tag | asset description | asset/archive size | archive digest |
|---|---|---|---|---|
| abundant_sequences:default | Abundant sequences in the FASTA format -- PhiX spike-in, Poly(A), Poly(C) and adapter sequences | 16.5KB / 2.3KB |
ecbdb6276a3725b66da8da8392e966f5
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| bismark_bt2_index:0.22.1 | Genome index for Bisulfite-Seq applications, produced by bismark_genome_preparation using bowtie2 | 12.3GB / 6.7GB |
272f05db28f49d39cc0709cae30154b4
|
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| bowtie1_index:1.3.0 | Genome index for bowtie, produced with bowtie-build | 2.6GB / 2.4GB |
6d130f42116f73a092bf4ea9f8d8b9fd
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| bowtie2_index:2.4.1 | Genome index for bowtie2, produced with bowtie2-build | 3.4GB / 3.1GB |
018e0a61ff73852aa3d31508d09a55bb
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| bwa_index:0.7.17 | Genome index for Burrows-Wheeler Alignment Tool, produced with bwa index | 4.7GB / 3.0GB |
db6450272931768ce56c3fbe3f6f95be
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| fasta:samtools-1.10 | DNA sequences in the FASTA format, indexed FASTA (produced with samtools index), chromosome sizes file and FASTA dict (produced with samtools dict) | 2.8GB / 807.7MB |
bf7b23f8e476459ea8c3ef2e05b089fc
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| small_rna:default | Small RNA sequences in the FASTA format. A predicted hairpin portion of a miRNA transcript and information on the location and sequence of the mature miRNA sequence | 142.1KB / 32.9KB |
128a9584ade69bedaecfd2434e3f6f85
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| star_index:2.7.3a | Genome index for STAR RNA-seq aligner, produced with STAR --runMode genomeGenerate | 23.9GB / 21.4GB |
10e0b2a44032092478ae4b69c8c1fa54
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