Aliases: canis_familiaris-ucsc-canfam2
Digest: b4cd78a3e8dc0ddc512102ca390a2b60b10b8f174079a9ca
Description: The Canis Familiaris (canFam2) reference sequence from UCSC
Assets
| download | asset name:tag | asset description | asset/archive size | archive digest |
|---|---|---|---|---|
| abundant_sequences:default | Abundant sequences in the FASTA format -- PhiX spike-in, Poly(A), Poly(C) and adapter sequences | 1.1MB / 2.3KB |
c297b59f4f0cd054846449b1d7d6cadb
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| bismark_bt2_index:0.22.1 | Genome index for Bisulfite-Seq applications, produced by bismark_genome_preparation using bowtie2 | 11.1GB / 6.2GB |
5b82b13eb5c1763f53a641f876b90371
|
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| bowtie1_index:1.3.0 | Genome index for bowtie, produced with bowtie-build | 2.4GB / 2.2GB |
95c60503d96f2fda9f8a006e6f6d010f
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| bowtie2_index:2.4.1 | Genome index for bowtie2, produced with bowtie2-build | 3.2GB / 2.9GB |
a1c846ec14f9d68f70467ada3e0fcca6
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| bwa_index:0.7.17 | Genome index for Burrows-Wheeler Alignment Tool, produced with bwa index | 4.1GB / 2.7GB |
6f0ed082e92ab4a9cd383da9346b5850
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| fasta:samtools-1.10 | DNA sequences in the FASTA format, indexed FASTA (produced with samtools index), chromosome sizes file and FASTA dict (produced with samtools dict) | 2.4GB / 744.6MB |
442543bf0615091dea6da7fffb75cbbb
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| small_rna:default | Small RNA sequences in the FASTA format. A predicted hairpin portion of a miRNA transcript and information on the location and sequence of the mature miRNA sequence | 688.2KB / 27.7KB |
326232fc9dfc364abe0649eb3f44a628
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| star_index:2.7.3a | Genome index for STAR RNA-seq aligner, produced with STAR --runMode genomeGenerate | 22.1GB / 19.9GB |
0ead65b4344038b1f7f719e8b8f2e3fb
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