Aliases: pan_troglodytes-ucsc-pantro4
Digest: bee2787505cb26227b14431842a71fd8cec0ad48240e2a99
Description: The Pan Troglodytes (panTro4) reference sequence from UCSC
Assets
| download | asset name:tag | asset description | asset/archive size | archive digest |
|---|---|---|---|---|
| abundant_sequences:default | Abundant sequences in the FASTA format -- PhiX spike-in, Poly(A), Poly(C) and adapter sequences | 16.6KB / 2.3KB |
8e0bb0bba6ac9a1e8c38d8a14b3bb119
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| bismark_bt2_index:0.22.1 | Genome index for Bisulfite-Seq applications, produced by bismark_genome_preparation using bowtie2 | 13.3GB / 7.2GB |
46d516919b88a7f50ee0ebb60fd9da7b
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| bowtie1_index:1.3.0 | Genome index for bowtie, produced with bowtie-build | 2.8GB / 2.5GB |
3ba3b0e025ab3101cfe6b469082556b5
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| bowtie2_index:2.4.1 | Genome index for bowtie2, produced with bowtie2-build | 3.6GB / 3.3GB |
791cf4e23345b3dbf37e6bf2fe72fe20
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| bwa_index:0.7.17 | Genome index for Burrows-Wheeler Alignment Tool, produced with bwa index | 5.1GB / 3.2GB |
ebf1c263a8584faab238f5ae512c6163
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| fasta:samtools-1.10 | DNA sequences in the FASTA format, indexed FASTA (produced with samtools index), chromosome sizes file and FASTA dict (produced with samtools dict) | 3.0GB / 864.2MB |
a926800223da7a5474bb5c753ba67694
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| small_rna:default | Small RNA sequences in the FASTA format. A predicted hairpin portion of a miRNA transcript and information on the location and sequence of the mature miRNA sequence | 719.4KB / 35.2KB |
a376468237dc6b75d65d0872f1af84b7
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| star_index:2.7.3a | Genome index for STAR RNA-seq aligner, produced with STAR --runMode genomeGenerate | 25.6GB / 22.9GB |
e6cdee7283d57d916ee9ef2c3ce820be
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