Aliases: rattus_norvegicus-ncbi-rgsc_v34
Digest: bf08592a8d52ac581557176757c1cff118345ff18ee80927
Description: The Rattus Norvegicus (RGSC_v3.4) reference sequence from NCBI
Assets
| download | asset name:tag | asset description | asset/archive size | archive digest |
|---|---|---|---|---|
| abundant_sequences:default | Abundant sequences in the FASTA format -- PhiX spike-in, Poly(A), Poly(C) and adapter sequences | 58.8KB / 2.3KB |
69ea6c24a7345c8a856001303d916502
|
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| bismark_bt2_index:0.22.1 | Genome index for Bisulfite-Seq applications, produced by bismark_genome_preparation using bowtie2 | 11.7GB / 6.4GB |
4c47cc03774e1dea1d9e5536a73b0cf8
|
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| bowtie1_index:1.3.0 | Genome index for bowtie, produced with bowtie-build | 2.5GB / 2.3GB |
82d7d4d1f1684e4d855ad0f5e62b38b7
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| bowtie2_index:2.4.1 | Genome index for bowtie2, produced with bowtie2-build | 3.3GB / 3.0GB |
a415541d16d452f13d28375ea658178e
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| bwa_index:0.7.17 | Genome index for Burrows-Wheeler Alignment Tool, produced with bwa index | 4.4GB / 2.8GB |
44dc20d25655cc9e4b174d27a302625b
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| fasta:samtools-1.10 | DNA sequences in the FASTA format, indexed FASTA (produced with samtools index), chromosome sizes file and FASTA dict (produced with samtools dict) | 2.6GB / 717.8MB |
ef65b8a5dc0f6226facc890c768759b3
|
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| star_index:2.7.3a | Genome index for STAR RNA-seq aligner, produced with STAR --runMode genomeGenerate | 23.0GB / 20.6GB |
712d6160dd40bc60586085a503e3d98c
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