Aliases: danio_rerio-ucsc-danrer10
Digest: c3416a98c6ce89c0b506bb7cf9624c27494bcf19728d850c
Description: The Danio Rerio (danRer10) reference sequence from UCSC
Assets
| download | asset name:tag | asset description | asset/archive size | archive digest |
|---|---|---|---|---|
| abundant_sequences:default | Abundant sequences in the FASTA format -- PhiX spike-in, Poly(A), Poly(C) and adapter sequences | 1.1MB / 2.3KB |
6adcbfb4dd16ed2d7db080c12508da55
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| bismark_bt2_index:0.22.1 | Genome index for Bisulfite-Seq applications, produced by bismark_genome_preparation using bowtie2 | 6.1GB / 3.4GB |
31c7616a859cf2fcbbe9118b0202014d
|
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| bowtie1_index:1.3.0 | Genome index for bowtie, produced with bowtie-build | 1.3GB / 1.2GB |
349edf3fcda4c86c2448c4cfe2089865
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| bowtie2_index:2.4.1 | Genome index for bowtie2, produced with bowtie2-build | 1.8GB / 1.6GB |
727ae35ec8b765a71a1a885612fd9bbf
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| bwa_index:0.7.17 | Genome index for Burrows-Wheeler Alignment Tool, produced with bwa index | 2.2GB / 1.4GB |
e28b971a100cd618299a7f59f317249e
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| fasta:samtools-1.10 | DNA sequences in the FASTA format, indexed FASTA (produced with samtools index), chromosome sizes file and FASTA dict (produced with samtools dict) | 1.3GB / 413.9MB |
4c5f002e7753dd1c1dcc05de777c0295
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| small_rna:default | Small RNA sequences in the FASTA format. A predicted hairpin portion of a miRNA transcript and information on the location and sequence of the mature miRNA sequence | 1.2MB / 18.3KB |
b29141473478c69c864bad697b0e0fc8
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| star_index:2.7.3a | Genome index for STAR RNA-seq aligner, produced with STAR --runMode genomeGenerate | 13.0GB / 11.5GB |
8be9b557d8bf1894fc784fd68b086ec5
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