Aliases: rattus_norvegicus-ucsc-rn6
Digest: cc750cc84321ef406148bffe0da80fc5077b690b7150272a
Description: The Rattus Norvegicus (rn6) reference sequence from UCSC
Assets
| download | asset name:tag | asset description | asset/archive size | archive digest |
|---|---|---|---|---|
| abundant_sequences:default | Abundant sequences in the FASTA format -- PhiX spike-in, Poly(A), Poly(C) and adapter sequences | 16.5KB / 2.3KB |
19bdb49f9e4ec6f1174bb39412cb5ecd
|
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| bismark_bt2_index:0.22.1 | Genome index for Bisulfite-Seq applications, produced by bismark_genome_preparation using bowtie2 | 12.3GB / 6.9GB |
6384d65dd5e89a8aea72ce93b43b050e
|
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| bowtie1_index:1.3.0 | Genome index for bowtie, produced with bowtie-build | 2.7GB / 2.5GB |
3706bbd26a0d289296025cb5942a139c
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| bowtie2_index:2.4.1 | Genome index for bowtie2, produced with bowtie2-build | 3.5GB / 3.2GB |
1ccb20e7096b60876e8c0c0fc3369ad5
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| bwa_index:0.7.17 | Genome index for Burrows-Wheeler Alignment Tool, produced with bwa index | 4.5GB / 2.9GB |
c27715a0e9c4f57567c8de08094100f2
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| fasta:samtools-1.10 | DNA sequences in the FASTA format, indexed FASTA (produced with samtools index), chromosome sizes file and FASTA dict (produced with samtools dict) | 2.6GB / 831.0MB |
b334bdd02de70c90d46f9faaf8597377
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| small_rna:default | Small RNA sequences in the FASTA format. A predicted hairpin portion of a miRNA transcript and information on the location and sequence of the mature miRNA sequence | 142.1KB / 33.0KB |
e85d6e59d21a635585407c6ef9c63694
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| star_index:2.7.3a | Genome index for STAR RNA-seq aligner, produced with STAR --runMode genomeGenerate | 24.4GB / 22.0GB |
f4926e6d18a9c5f7b140fc5fcc4f3a6d
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