Aliases: sus_scrofa-ncbi-sscrofa102

Digest: cce6f87458c1ba39e952aad2c91a6a68daf7500a7cef72d2

Description: The Sus Scrofa (Sscrofa10.2) reference sequence from NCBI


Assets

download asset name:tag asset description asset/archive size archive digest
abundant_sequences:default Abundant sequences in the FASTA format -- PhiX spike-in, Poly(A), Poly(C) and adapter sequences 1.1MB / 2.3KB f1dae5fbc45dd60767bbe97be58c4fe7
bismark_bt2_index:0.22.1 Genome index for Bisulfite-Seq applications, produced by bismark_genome_preparation using bowtie2 11.1GB / 6.0GB 503e2fd970524c47e327029a25f87baf
bowtie1_index:1.3.0 Genome index for bowtie, produced with bowtie-build 2.3GB / 2.1GB e2f65ea2b0cac3d439950a9f63155496
bowtie2_index:2.4.1 Genome index for bowtie2, produced with bowtie2-build 3.1GB / 2.8GB 16487db6768f46740e83f7b5df529c5f
bwa_index:0.7.17 Genome index for Burrows-Wheeler Alignment Tool, produced with bwa index 4.2GB / 2.7GB 108d17e7e162d6c4bde98c8d0d5846c6
fasta:samtools-1.10 DNA sequences in the FASTA format, indexed FASTA (produced with samtools index), chromosome sizes file and FASTA dict (produced with samtools dict) 2.5GB / 675.3MB 05cf8dbee033bda7f136a16fa70df3d6
star_index:2.7.3a Genome index for STAR RNA-seq aligner, produced with STAR --runMode genomeGenerate 21.7GB / 19.4GB 8ecd452256a8e12fd82795ed461feaa1