Aliases: equus_caballus-ncbi-equcab20, equus_caballus-ensembl-equcab2
Digest: d517af93e7176a6b17221caffb0973edc0f9e7b422b4a35e
Description: The Equus Caballus (EquCab2.0) reference sequence from NCBI
Assets
| download | asset name:tag | asset description | asset/archive size | archive digest |
|---|---|---|---|---|
| abundant_sequences:default | Abundant sequences in the FASTA format -- PhiX spike-in, Poly(A), Poly(C) and adapter sequences | 594.3KB / 2.3KB |
50f2b0d82a893a3afebeec538312c505
|
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| bismark_bt2_index:0.22.1 | Genome index for Bisulfite-Seq applications, produced by bismark_genome_preparation using bowtie2 | 10.7GB / 6.2GB |
9ff6dc2a1080bd34af47e9c5d3593bd7
|
|
| bowtie1_index:1.3.0 | Genome index for bowtie, produced with bowtie-build | 2.3GB / 2.2GB |
75c7c1b6a9f438d4b10c3155b6cd078c
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| bowtie2_index:2.4.1 | Genome index for bowtie2, produced with bowtie2-build | 3.1GB / 2.9GB |
32e724a9ae30151a1a916e07d9b7a404
|
|
| bwa_index:0.7.17 | Genome index for Burrows-Wheeler Alignment Tool, produced with bwa index | 3.9GB / 2.6GB |
3e808d91c9fb43c81daaf6f1dc860ae6
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|
| fasta:samtools-1.10 | DNA sequences in the FASTA format, indexed FASTA (produced with samtools index), chromosome sizes file and FASTA dict (produced with samtools dict) | 2.2GB / 688.4MB |
04cb3c5d1b103a8a52170619b891099c
|
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| small_rna:default | Small RNA sequences in the FASTA format. A predicted hairpin portion of a miRNA transcript and information on the location and sequence of the mature miRNA sequence | 1.3MB / 43.0KB |
acc723f554c282466d993f52649995c0
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| star_index:2.7.3a | Genome index for STAR RNA-seq aligner, produced with STAR --runMode genomeGenerate | 21.6GB / 19.5GB |
1e16e37887450685a5d20393825d3131
|