Aliases: sus_scrofa-ncbi-sscrofa92
Digest: e36f1b11c1fbe6d0b6498ae872fee2bd90a8e173febc8e63
Description: The Sus Scrofa (Sscrofa9.2) reference sequence from NCBI
Assets
| download | asset name:tag | asset description | asset/archive size | archive digest |
|---|---|---|---|---|
| abundant_sequences:default | Abundant sequences in the FASTA format -- PhiX spike-in, Poly(A), Poly(C) and adapter sequences | 16.5KB / 2.3KB |
a8fdbce4d496ce44fd78ca75ecc93237
|
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| bismark_bt2_index:0.22.1 | Genome index for Bisulfite-Seq applications, produced by bismark_genome_preparation using bowtie2 | 10.2GB / 5.8GB |
86498aa9f09d3d4cb76b09ebcfffdbf3
|
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| bowtie1_index:1.3.0 | Genome index for bowtie, produced with bowtie-build | 2.2GB / 2.1GB |
6f24a82280203bc168ee72e87d59631d
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| bowtie2_index:2.4.1 | Genome index for bowtie2, produced with bowtie2-build | 3.0GB / 2.7GB |
82a3b83be75efbb37c3cc23219d10f03
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| bwa_index:0.7.17 | Genome index for Burrows-Wheeler Alignment Tool, produced with bwa index | 3.7GB / 2.4GB |
688b22341a6b0a3a5c5eae7b146443c8
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| fasta:samtools-1.10 | DNA sequences in the FASTA format, indexed FASTA (produced with samtools index), chromosome sizes file and FASTA dict (produced with samtools dict) | 2.1GB / 646.5MB |
8a4b3609bb93a8e5732bc6fced493eb8
|
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| star_index:2.7.3a | Genome index for STAR RNA-seq aligner, produced with STAR --runMode genomeGenerate | 20.7GB / 18.7GB |
89e27ab588c3c783de49ce3d11e906d1
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