Aliases: gallus_gallus-ucsc-galgal3
Digest: f0f0472cf8851887f251b4eb210f47136bcbdde38d6220f3
Description: The Gallus Gallus (galGal3) reference sequence from UCSC
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asset name:tag
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asset description
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asset/archive size
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archive digest
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| abundant_sequences:default | Abundant sequences in the FASTA format -- PhiX spike-in, Poly(A), Poly(C) and adapter sequences | 16.5KB / 2.3KB | d6d0dc4e68e1f5fc22fa6cf839edfde7 | |
| bismark_bt2_index:0.22.1 | Genome index for Bisulfite-Seq applications, produced by bismark_genome_preparation using bowtie2 | 4.6GB / 2.6GB | ff82803ca3b9d231922410c29ca3d405 | |
| bowtie1_index:1.3.0 | Genome index for bowtie, produced with bowtie-build | 1016.2MB / 967.1MB | f30c77d358df5dda689e44da20e57ab8 | |
| bowtie2_index:2.4.1 | Genome index for bowtie2, produced with bowtie2-build | 1.3GB / 1.2GB | 0967852eb17d3ea5c2e48710d45bbb23 | |
| bwa_index:0.7.17 | Genome index for Burrows-Wheeler Alignment Tool, produced with bwa index | 1.7GB / 1.1GB | 5b92041f21811e0c6ed8041a5c7edf5b | |
| fasta:samtools-1.10 | DNA sequences in the FASTA format, indexed FASTA (produced with samtools index), chromosome sizes file and FASTA dict (produced with samtools dict) | 1003.8MB / 300.4MB | 79196e3ea5ac40abc626d3778004a83e | |
| small_rna:default | Small RNA sequences in the FASTA format. A predicted hairpin portion of a miRNA transcript and information on the location and sequence of the mature miRNA sequence | 191.1KB / 46.3KB | 035b4c73e00012df1e72551add9c3d6e | |
| star_index:2.7.3a | Genome index for STAR RNA-seq aligner, produced with STAR --runMode genomeGenerate | 10.0GB / 8.7GB | 3fa034a3a8600c00e99c7851db9f7369 | |