Aliases: pan_troglodytes-ucsc-pantro3
Digest: f2b9d98bed7e4e6c98f863ed33acfb00201b2a48b07d0b7a
Description: The Pan Troglodytes (panTro3) reference sequence from UCSC
Assets
| download | asset name:tag | asset description | asset/archive size | archive digest |
|---|---|---|---|---|
| abundant_sequences:default | Abundant sequences in the FASTA format -- PhiX spike-in, Poly(A), Poly(C) and adapter sequences | 45.5KB / 2.3KB |
30bbfa9713b5782b251b676f87eb4231
|
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| bismark_bt2_index:0.22.1 | Genome index for Bisulfite-Seq applications, produced by bismark_genome_preparation using bowtie2 | 13.3GB / 7.1GB |
49d34f843f7f7d795b1d8b6326a6edbc
|
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| bowtie1_index:1.3.0 | Genome index for bowtie, produced with bowtie-build | 2.8GB / 2.5GB |
8bd34e6120f30394d950e1cf8b4f0512
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| bowtie2_index:2.4.1 | Genome index for bowtie2, produced with bowtie2-build | 3.6GB / 3.3GB |
2610535dce6425a41d8793ce5ac1662c
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| bwa_index:0.7.17 | Genome index for Burrows-Wheeler Alignment Tool, produced with bwa index | 5.1GB / 3.2GB |
809131ecc79888be188b775af744ac48
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| fasta:samtools-1.10 | DNA sequences in the FASTA format, indexed FASTA (produced with samtools index), chromosome sizes file and FASTA dict (produced with samtools dict) | 3.0GB / 863.3MB |
857555fd0fcd1113825d9832a4a6ee77
|
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| small_rna:default | Small RNA sequences in the FASTA format. A predicted hairpin portion of a miRNA transcript and information on the location and sequence of the mature miRNA sequence | 146.3KB / 35.2KB |
60241dafc0034e1f64c200cf39e965a8
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| star_index:2.7.3a | Genome index for STAR RNA-seq aligner, produced with STAR --runMode genomeGenerate | 25.5GB / 22.8GB |
a57eb92fed7e604f800331b636047bb9
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