cellranger_reference (version: 0.0.1)

Output asset class: cellranger_reference

Description: Cell Ranger custom genome reference for read alignment and gene expression quantification

Inputs

Type Name Description Default
assets fasta (fasta) fasta asset for genome fasta
assets gtf (gtf) Annotation file in Gene Transfer Format (GTF) from Gencode gencode_gtf
params threads Number of threads to use for parallel computing 8

API endpoints