salmon_sa_index (version: 0.0.1)

Output asset class: salmon_sa_index

Description: Transcriptome index for salmon, produced with salmon index using selective alignment method. Improves quantification accuracy compared to the regular index.

Inputs

Type Name Description Default
assets fasta (fasta) fasta asset for genome fasta
assets fasta_txome (fasta) fasta asset for transcriptome fasta_txome
params kmer The length of kmer to use to create the indices 31
params threads Number of threads to use for parallel computing 8

API endpoints