tallymer_index (version: 0.0.1)
Output asset class: tallymer_index
Description: Indexed k-mers for a given enhanced suffix array at a fixed value of k
Inputs
| Type | Name | Description | Default |
|---|---|---|---|
| assets | fasta (fasta) | fasta asset for genome | fasta |
| assets | suffixerator_index (suffixerator_index) | enhanced suffix array index for genome | suffixerator_index |
| params | mersize | The mer size. | 30 |
| params | minocc | The minimum occurrence number for the mers to index. | 2 |